IQ-TREE multicore version 1.6.12 for Linux 64-bit built Aug 15 2019
Developed by Bui Quang Minh, Nguyen Lam Tung, Olga Chernomor,
Heiko Schmidt, Dominik Schrempf, Michael Woodhams.

Host:    fermat (AVX2, FMA3, 1009 GB RAM)
Command: ../../iqtree -s Pettalidae_28S_mafft.fasta -m TESTNEW -bb 1000 -alrt 1000
Seed:    26988 (Using SPRNG - Scalable Parallel Random Number Generator)
Time:    Wed Jun 15 22:54:35 2022
Kernel:  AVX+FMA - 1 threads (128 CPU cores detected)

HINT: Use -nt option to specify number of threads because your CPU has 128 cores!
HINT: -nt AUTO will automatically determine the best number of threads to use.

Reading alignment file Pettalidae_28S_mafft.fasta ... Fasta format detected
Alignment most likely contains DNA/RNA sequences
Alignment has 122 sequences with 2157 columns, 616 distinct patterns
276 parsimony-informative, 274 singleton sites, 1607 constant sites
                                             Gap/Ambiguity  Composition  p-value
   1  Limulus_polyphemus                             3.94%    passed     58.35%
   2  Metasiro_savannahensis_MCZ-134557              4.08%    passed     95.71%
   3  Cyphophthalmus_duricorius_MCZ-135009          41.21%    passed     48.27%
   4  Paramiopsalis_ramulosus_MCZ-135006             3.20%    passed     99.63%
   5  Parasiro_coiffaiti_MCZ-132372                  3.76%    passed     89.53%
   6  Parasiro_minor_MCZ-132374                      3.66%    passed     96.46%
   7  Siro_exilis_MCZ-134551                         6.72%    passed     94.09%
   8  Siro_rubens_MCZ-132391                         3.71%    passed     84.86%
   9  Suzukielus_sauteri_MCZ-132256                  3.85%    passed     89.23%
  10  Archaeopurcellia_eureka_MCZ-162249             5.52%    passed     94.29%
  11  Aoraki_westlandica_MCZ-134653                  3.43%    passed     99.33%
  12  Aoraki_crypta_MCZ-101289                       3.20%    passed     99.89%
  13  Aoraki_denticulata_denticulata_MCZ-134642      4.73%    passed     98.78%
  14  Aoraki_denticulata_denticulata_MCZ-134646      3.20%    passed     99.95%
  15  Aoraki_denticulata_denticulata_MCZ-134639_1    3.20%    passed     99.78%
  16  Aoraki_denticulata_denticulata_MCZ-134659_1    3.20%    passed     99.95%
  17  Aoraki_denticulata_major_MCZ-134644            3.20%    passed     99.95%
  18  Aoraki_denticulata_major_MCZ-35669            41.03%    passed     30.01%
  19  Aoraki_grandis_MCZ-134652                      3.20%    passed     99.82%
  20  Aoraki_granulosa_MCZ-134675                    3.20%    passed     99.89%
  21  Aoraki_granulosa_MCZ-134684                    3.20%    passed     99.89%
  22  Aoraki_healyi_MCZ-134638                       3.20%    passed     99.83%
  23  Aoraki_inerma_MCZ-134648                       3.20%    passed     99.76%
  24  Aoraki_longitarsa_MCZ-134656_1                 3.20%    passed     99.95%
  25  Aoraki_longitarsa_MCZ-134656_2                 3.20%    passed     99.95%
  26  Aoraki_longitarsa_MCZ-35659                    3.25%    passed     99.94%
  27  Aoraki_longitarsa_MCZ-35660                    3.25%    passed     99.94%
  28  Aoraki_longitarsa_CMNZ                         3.20%    passed     99.95%
  29  Aoraki_tumidata_MCZ-133838                    29.72%    passed     92.41%
  30  Austropurcellia_acuta_MCZ-134701               3.29%    passed     99.94%
  31  Austropurcellia_arcticosa_MCZ-132325           8.53%    passed     99.78%
  32  Austropurcellia_cadens_CASENT9035046           3.34%    passed     99.88%
  33  Austropurcellia_clousei_MCZ-132339             4.59%    passed     99.07%
  34  Austropurcellia_culminis_MCZ-132322            3.29%    passed     99.84%
  35  Austropurcellia_daviesae_MCZ-132323            3.29%    passed     99.90%
  36  Austropurcellia_despectata_MCZ-132324          3.29%    passed     99.72%
  37  Austropurcellia_giribeti_MCZ-132337            8.16%    passed     99.90%
  38  Austropurcellia_giribeti_MCZ-134696            3.29%    passed     99.53%
  39  Austropurcellia_scoparia_MCZ-134700            3.29%    passed     99.89%
  40  Austropurcellia_sharmai_MCZ-134698             3.29%    passed     99.83%
  41  Austropurcellia_tholei_MCZ-134697              3.29%    passed     99.93%
  42  Austropurcellia_vicina_MCZ-132318              3.29%    passed     99.79%
  43  Austropurcellia_vicina_MCZ-132334              5.19%    passed     99.28%
  44  Chileogovea_jocasta_MCZ-134713                 3.34%    passed     99.96%
  45  Chileogovea_jocasta_MCZ-134714                 3.34%    passed     99.96%
  46  Chileogovea_jocasta_MCZ-134715                 3.34%    passed     99.96%
  47  Chileogovea_oedipus_MCZ-134709                 3.34%    passed     99.68%
  48  Chileogovea_oedipus_MCZ-134710                 3.34%    passed     99.37%
  49  Chileogovea_oedipus_MCZ-134711                14.33%    passed     66.76%
  50  Chileogovea_oedipus_MCZ-134712                 3.29%    passed     98.14%
  51  Karripurcellia_harveyi_MCZ-132345              3.29%    passed     99.87%
  52  Karripurcellia_peckorum_MCZ-134719             3.29%    passed     99.87%
  53  Karripurcellia_peckorum_MCZ-134720             3.29%    passed     99.87%
  54  Karripurcellia_peckorum_MCZ-134721             3.29%    passed     99.87%
  55  Karripurcellia_peckorum_MCZ-134725             3.29%    passed     99.87%
  56  Karripurcellia_peckorum_MCZ-134726             3.29%    passed     99.68%
  57  Neopurcellia_salmoni_MCZ-29317                 3.34%    passed     99.96%
  58  Neopurcellia_salmoni_MCZ-133839                3.34%    passed     99.98%
  59  Neopurcellia_salmoni_MCZ-134739               47.98%    passed     56.59%
  60  Neopurcellia_salmoni_MCZ-134741                3.34%    passed     99.98%
  61  Parapurcellia_amatola_MCZ-133841               2.97%    passed     97.20%
  62  Parapurcellia_convexa_MCZ-134744               2.92%    passed     98.59%
  63  Parapurcellia_convexa_MCZ-128902               2.92%    passed     99.49%
  64  Parapurcellia_fissa_MCZ-134745                 2.83%    passed     98.86%
  65  Parapurcellia_minuta_MCZ-134747                2.69%    passed     97.25%
  66  Parapurcellia_monticola_MCZ-60357_1            3.01%    passed     99.33%
  67  Parapurcellia_monticola_MCZ-60357_2            3.01%    passed     99.33%
  68  Parapurcellia_monticola_MCZ-134751             3.01%    passed     99.33%
  69  Parapurcellia_peregrinator_MCZ-128901          2.78%    passed     96.18%
  70  Parapurcellia_rumpiana_MCZ-134748              2.92%    passed     95.47%
  71  Parapurcellia_silvicola_MCZ-134742_1           2.92%    passed     98.82%
  72  Parapurcellia_silvicola_MCZ-134742_2           2.92%    passed     98.82%
  73  Parapurcellia_staregai_MCZ-134746              2.97%    passed     99.34%
  74  Parapurcellia_nsp_Limpopo_MCZ-128900           2.92%    passed     99.68%
  75  Pettalus_thwaitesi_DNA101223                   3.06%    passed     96.92%
  76  Pettalus_sp_MCZ-132353                         3.01%    passed     96.80%
  77  Pettalus_sp_MCZ-132354                         3.06%    passed     98.38%
  78  Pettalus_sp_MCZ-132356                         3.34%    passed     97.16%
  79  Pettalus_sp_MCZ-132357                         3.11%    passed     96.67%
  80  Pettalus_sp_MCZ-132359                         3.06%    passed     98.38%
  81  Pettalus_sp_MCZ-132360                         3.01%    passed     92.65%
  82  Pettalus_sp_MCZ-134967                        31.85%    passed     97.71%
  83  Purcellia_argasiformis_MCZ-134759              3.29%    passed     99.25%
  84  Purcellia_argasiformis_MCZ-134762              3.29%    passed     98.99%
  85  Purcellia_griswoldi_MCZ-128898                 3.29%    passed     99.67%
  86  Purcellia_griswoldi_MCZ-134756                 3.29%    passed     99.48%
  87  Purcellia_illustrans_MCZ-60635                 3.29%    passed     99.45%
  88  Purcellia_illustrans_MCZ-128896                3.29%    passed     99.45%
  89  Purcellia_illustrans_MCZ-134753               10.11%    passed     92.47%
  90  Purcellia_illustrans_MCZ-134754                3.29%    passed     99.45%
  91  Purcellia_leleupi_MCZ-129098                   3.29%    passed     99.66%
  92  Purcellia_sp_MCZ-128897                        3.29%    passed     99.57%
  93  Purcellia_sp_MCZ-129493                        3.29%    passed     99.48%
  94  Purcellia_sp_MCZ-129494                        3.38%    passed     99.27%
  95  Rakaia_antipodiana_MCZ-134580                  3.25%    passed     99.24%
  96  Rakaia_australis_MCZ-134592                    5.19%    passed     99.86%
  97  Rakaia_collaris_MCZ-134574                     3.20%    passed     99.75%
  98  Rakaia_digitata_MCZ-134571                     3.15%    passed     99.53%
  99  Rakaia_dorothea_MCZ-134577                     3.29%    passed    100.00%
 100  Rakaia_florensis_MCZ-134588                    3.29%    passed     99.86%
 101  Rakaia_lindsayi_MCZ-134598                     3.29%    passed     99.98%
 102  Rakaia_macra_MCZ-134582                        4.78%    passed     98.62%
 103  Rakaia_media_MCZ-134581                        3.25%    passed     99.81%
 104  Rakaia_media_MCZ-134605                        7.56%    passed     95.75%
 105  Rakaia_minutissima_MCZ-29280                   3.29%    passed     99.47%
 106  Rakaia_minutissima_MCZ-134591                  3.29%    passed     99.92%
 107  Rakaia_pauli_MCZ-134576                        3.25%    passed     99.07%
 108  Rakaia_solitaria_MCZ-134585                    3.20%    passed     99.98%
 109  Rakaia_sorenseni_MCZ-134567                    3.15%    passed     99.97%
 110  Rakaia_stewartiensis_MCZ-134599                3.25%    passed     99.86%
 111  Rakaia_uniloca_MCZ-134583                      3.52%    passed     99.88%
 112  Rakaia_uniloca_MCZ-134600                      3.25%    passed     99.88%
 113  Rakaia_sp_MCZ-35662                            3.15%    passed     99.53%
 114  Rakaia_sp_MCZ-35668                            3.11%    passed     99.68%
 115  Rakaia_sp_MCZ-100753                           3.15%    passed     99.81%
 116  Rakaia_sp_MCZ-129612                           3.29%    passed    100.00%
 117  Rakaia_sp_MCZ-129614                           3.29%    passed     99.98%
 118  Rakaia_sp_MCZ-133847                           3.29%    passed    100.00%
 119  Rakaia_sp_MCZ-133849                           3.20%    passed     99.46%
 120  Rakaia_sp_MCZ-134568                          41.17%    passed     76.56%
 121  Rakaia_sp_MCZ-134575                           3.20%    passed     99.96%
 122  Rakaia_sp_MCZ-134584                           3.29%    passed    100.00%
****  TOTAL                                          5.37%  0 sequences failed composition chi2 test (p-value<5%; df=3)
NOTE: Aoraki_denticulata_denticulata_MCZ-134659_1 is identical to Aoraki_denticulata_denticulata_MCZ-134646 but kept for subsequent analysis
NOTE: Aoraki_granulosa_MCZ-134684 is identical to Aoraki_granulosa_MCZ-134675 but kept for subsequent analysis
NOTE: Aoraki_longitarsa_MCZ-134656_2 is identical to Aoraki_longitarsa_MCZ-134656_1 but kept for subsequent analysis
NOTE: Aoraki_longitarsa_MCZ-35660 is identical to Aoraki_longitarsa_MCZ-35659 but kept for subsequent analysis
NOTE: Chileogovea_jocasta_MCZ-134714 is identical to Chileogovea_jocasta_MCZ-134713 but kept for subsequent analysis
NOTE: Karripurcellia_peckorum_MCZ-134719 is identical to Karripurcellia_harveyi_MCZ-132345 but kept for subsequent analysis
NOTE: Neopurcellia_salmoni_MCZ-134741 is identical to Neopurcellia_salmoni_MCZ-133839 but kept for subsequent analysis
NOTE: Parapurcellia_monticola_MCZ-60357_2 is identical to Parapurcellia_monticola_MCZ-60357_1 but kept for subsequent analysis
NOTE: Parapurcellia_silvicola_MCZ-134742_2 is identical to Parapurcellia_silvicola_MCZ-134742_1 but kept for subsequent analysis
NOTE: Pettalus_sp_MCZ-132359 is identical to Pettalus_sp_MCZ-132354 but kept for subsequent analysis
NOTE: Purcellia_illustrans_MCZ-128896 is identical to Purcellia_illustrans_MCZ-60635 but kept for subsequent analysis
NOTE: Rakaia_sp_MCZ-35662 is identical to Rakaia_digitata_MCZ-134571 but kept for subsequent analysis
NOTE: Rakaia_sp_MCZ-129612 is identical to Rakaia_dorothea_MCZ-134577 but kept for subsequent analysis
NOTE: 8 identical sequences (see below) will be ignored for subsequent analysis
NOTE: Aoraki_denticulata_major_MCZ-134644 (identical to Aoraki_denticulata_denticulata_MCZ-134646) is ignored but added at the end
NOTE: Chileogovea_jocasta_MCZ-134715 (identical to Chileogovea_jocasta_MCZ-134713) is ignored but added at the end
NOTE: Karripurcellia_peckorum_MCZ-134720 (identical to Karripurcellia_harveyi_MCZ-132345) is ignored but added at the end
NOTE: Karripurcellia_peckorum_MCZ-134721 (identical to Karripurcellia_harveyi_MCZ-132345) is ignored but added at the end
NOTE: Karripurcellia_peckorum_MCZ-134725 (identical to Karripurcellia_harveyi_MCZ-132345) is ignored but added at the end
NOTE: Parapurcellia_monticola_MCZ-134751 (identical to Parapurcellia_monticola_MCZ-60357_1) is ignored but added at the end
NOTE: Purcellia_illustrans_MCZ-134754 (identical to Purcellia_illustrans_MCZ-60635) is ignored but added at the end
NOTE: Rakaia_sp_MCZ-134584 (identical to Rakaia_dorothea_MCZ-134577) is ignored but added at the end

For your convenience alignment with unique sequences printed to Pettalidae_28S_mafft.fasta.uniqueseq.phy


Create initial parsimony tree by phylogenetic likelihood library (PLL)... 0.009 seconds
NOTE: ModelFinder requires 25 MB RAM!
ModelFinder will test 286 DNA models (sample size: 2157) ...
 No. Model         -LnL         df  AIC          AICc         BIC
  1  JC            10690.515    225 21831.029    21883.696    23108.236
  2  JC+I          10068.355    226 20588.710    20641.873    21871.593
  3  JC+G4         10000.015    226 20452.031    20505.194    21734.914
  4  JC+I+G4       9917.477     227 20288.954    20342.615    21577.514
  5  JC+R2         9927.825     227 20309.650    20363.311    21598.210
  6  JC+R3         9889.253     229 20236.506    20291.171    21536.418
  7  JC+R4         9874.106     231 20210.211    20265.891    21521.477
  8  JC+R5         9860.344     233 20186.689    20243.394    21509.307
  9  JC+R6         9855.761     235 20181.522    20239.262    21515.493
 14  F81+F         10722.925    228 21901.850    21956.012    23196.086
 15  F81+F+I       10105.208    229 20668.415    20723.080    21968.328
 16  F81+F+G4      10038.680    229 20535.361    20590.026    21835.273
 17  F81+F+I+G4    9958.492     230 20376.985    20432.156    21682.574
 18  F81+F+R2      9970.124     230 20400.248    20455.419    21705.837
 19  F81+F+R3      9932.273     232 20328.546    20384.737    21645.488
 20  F81+F+R4      9917.428     234 20302.857    20360.079    21631.152
 21  F81+F+R5      9904.023     236 20280.045    20338.308    21619.693
 22  F81+F+R6      9899.536     238 20275.073    20334.387    21626.073
 27  K2P           10558.974    226 21569.949    21623.111    22852.832
 28  K2P+I         9928.411     227 20310.822    20364.483    21599.381
 29  K2P+G4        9855.859     227 20165.717    20219.378    21454.277
 30  K2P+I+G4      9771.792     228 19999.584    20053.746    21293.820
 31  K2P+R2        9785.238     228 20026.477    20080.639    21320.713
 32  K2P+R3        9745.490     230 19950.980    20006.151    21256.569
 33  K2P+R4        9729.509     232 19923.018    19979.209    21239.960
 34  K2P+R5        9714.907     234 19897.814    19955.036    21226.109
 35  K2P+R6        9709.404     236 19890.808    19949.070    21230.455
 40  HKY+F         10585.165    229 21628.330    21682.995    22928.242
 41  HKY+F+I       9942.581     230 20345.161    20400.333    21650.750
 42  HKY+F+G4      9873.387     230 20206.775    20261.946    21512.364
 43  HKY+F+I+G4    9791.742     231 20045.484    20101.164    21356.750
 44  HKY+F+R2      9812.344     231 20086.688    20142.368    21397.953
 45  HKY+F+R3      9772.441     233 20010.881    20067.586    21333.500
 46  HKY+F+R4      9756.071     235 19982.141    20039.882    21316.113
 47  HKY+F+R5      9740.685     237 19955.370    20014.157    21300.694
 48  HKY+F+R6      9735.049     239 19948.098    20007.942    21304.775
 53  TNe           10471.872    227 21397.744    21451.405    22686.304
 54  TNe+I         9888.900     228 20233.800    20287.962    21528.036
 55  TNe+G4        9792.813     228 20041.626    20095.788    21335.862
 56  TNe+I+G4      9719.368     229 19896.736    19951.401    21196.649
 57  TNe+R2        9722.823     229 19903.646    19958.311    21203.558
 58  TNe+R3        9683.783     231 19829.566    19885.246    21140.831
 59  TNe+R4        9668.619     233 19803.238    19859.944    21125.857
 60  TNe+R5        9655.622     235 19781.244    19838.985    21115.216
 61  TNe+R6        9651.582     237 19777.165    19835.952    21122.489
 66  TN+F          10469.700    230 21399.400    21454.572    22704.989
 67  TN+F+I        9885.544     231 20233.088    20288.768    21544.353
 68  TN+F+G4       9786.929     231 20035.859    20091.539    21347.124
 69  TN+F+I+G4     9716.316     232 19896.632    19952.824    21213.574
 70  TN+F+R2       9726.211     232 19916.422    19972.613    21233.364
 71  TN+F+R3       9686.402     234 19840.804    19898.026    21169.099
 72  TN+F+R4       9671.241     236 19814.482    19872.744    21154.129
 73  TN+F+R5       9658.253     238 19792.506    19851.820    21143.507
 74  TN+F+R6       9654.155     240 19788.310    19848.686    21150.664
 79  K3P           10560.956    227 21575.911    21629.572    22864.471
 80  K3P+I         9929.161     228 20314.323    20368.485    21608.559
 81  K3P+G4        9856.197     228 20168.394    20222.556    21462.630
 82  K3P+I+G4      9771.624     229 20001.247    20055.913    21301.160
 83  K3P+R2        9785.314     229 20028.628    20083.293    21328.540
 84  K3P+R3        9745.275     231 19952.550    20008.230    21263.816
 85  K3P+R4        9728.838     233 19923.677    19980.382    21246.295
 86  K3P+R5        9714.087     235 19898.175    19955.916    21232.146
 87  K3P+R6        9708.892     237 19891.784    19950.571    21237.108
 92  K3Pu+F        10584.564    230 21629.128    21684.300    22934.717
 93  K3Pu+F+I      9941.539     231 20345.077    20400.757    21656.342
 94  K3Pu+F+G4     9872.210     231 20206.420    20262.100    21517.685
 95  K3Pu+F+I+G4   9790.613     232 20045.225    20101.417    21362.167
 96  K3Pu+F+R2     9811.474     232 20086.947    20143.139    21403.889
 97  K3Pu+F+R3     9771.512     234 20011.023    20068.245    21339.318
 98  K3Pu+F+R4     9754.911     236 19981.823    20040.085    21321.471
 99  K3Pu+F+R5     9739.496     238 19954.992    20014.306    21305.993
100  K3Pu+F+R6     9733.778     240 19947.556    20007.932    21309.910
105  TPM2+F        10567.111    230 21594.222    21649.393    22899.811
106  TPM2+F+I      9914.254     231 20290.509    20346.189    21601.774
107  TPM2+F+G4     9844.792     231 20151.583    20207.263    21462.848
108  TPM2+F+I+G4   9766.730     232 19997.460    20053.651    21314.401
109  TPM2+F+R2     9793.208     232 20050.415    20106.606    21367.357
110  TPM2+F+R3     9753.744     234 19975.488    20032.709    21303.783
111  TPM2+F+R4     9737.002     236 19946.004    20004.266    21285.652
112  TPM2+F+R5     9721.007     238 19918.014    19977.327    21269.014
113  TPM2+F+R6     9714.888     240 19909.775    19970.151    21272.129
118  TPM2u+F       10567.121    230 21594.242    21649.413    22899.831
119  TPM2u+F+I     9914.262     231 20290.523    20346.203    21601.789
120  TPM2u+F+G4    9844.799     231 20151.598    20207.278    21462.863
121  TPM2u+F+I+G4  9766.710     232 19997.419    20053.610    21314.361
122  TPM2u+F+R2    9793.213     232 20050.426    20106.617    21367.368
123  TPM2u+F+R3    9753.747     234 19975.493    20032.715    21303.788
124  TPM2u+F+R4    9736.995     236 19945.990    20004.253    21285.638
125  TPM2u+F+R5    9720.993     238 19917.985    19977.299    21268.986
126  TPM2u+F+R6    9714.872     240 19909.745    19970.120    21272.098
131  TPM3+F        10551.966    230 21563.932    21619.103    22869.521
132  TPM3+F+I      9901.072     231 20264.143    20319.823    21575.409
133  TPM3+F+G4     9830.501     231 20123.002    20178.682    21434.267
134  TPM3+F+I+G4   9753.117     232 19970.234    20026.425    21287.176
135  TPM3+F+R2     9780.595     232 20025.191    20081.382    21342.132
136  TPM3+F+R3     9740.236     234 19948.473    20005.695    21276.768
137  TPM3+F+R4     9723.291     236 19918.582    19976.845    21258.230
138  TPM3+F+R5     9707.207     238 19890.414    19949.728    21241.414
139  TPM3+F+R6     9700.997     240 19881.993    19942.369    21244.347
144  TPM3u+F       10551.965    230 21563.929    21619.100    22869.518
145  TPM3u+F+I     9901.070     231 20264.141    20319.821    21575.406
146  TPM3u+F+G4    9830.500     231 20123.000    20178.680    21434.265
147  TPM3u+F+I+G4  9753.104     232 19970.208    20026.399    21287.150
148  TPM3u+F+R2    9780.594     232 20025.189    20081.380    21342.131
149  TPM3u+F+R3    9740.234     234 19948.468    20005.690    21276.763
150  TPM3u+F+R4    9723.282     236 19918.563    19976.826    21258.211
151  TPM3u+F+R5    9707.195     238 19890.390    19949.703    21241.390
152  TPM3u+F+R6    9700.984     240 19881.968    19942.344    21244.322
157  TIMe          10471.856    228 21399.711    21453.873    22693.947
158  TIMe+I        9888.880     229 20235.760    20290.425    21535.672
159  TIMe+G4       9792.784     229 20043.567    20098.232    21343.480
160  TIMe+I+G4     9719.448     230 19898.896    19954.067    21204.485
161  TIMe+R2       9722.750     230 19905.501    19960.672    21211.090
162  TIMe+R3       9683.682     232 19831.365    19887.556    21148.307
163  TIMe+R4       9668.322     234 19804.643    19861.865    21132.938
164  TIMe+R5       9655.272     236 19782.545    19840.807    21122.192
165  TIMe+R6       9651.238     238 19778.476    19837.790    21129.477
170  TIM+F         10469.061    231 21400.121    21455.801    22711.387
171  TIM+F+I       9884.539     232 20233.079    20289.270    21550.021
172  TIM+F+G4      9785.981     232 20035.961    20092.153    21352.903
173  TIM+F+I+G4    9715.428     233 19896.857    19953.562    21219.475
174  TIM+F+R2      9725.417     233 19916.835    19973.540    21239.453
175  TIM+F+R3      9685.571     235 19841.142    19898.883    21175.113
176  TIM+F+R4      9670.257     237 19814.514    19873.300    21159.838
177  TIM+F+R5      9657.225     239 19792.449    19852.293    21149.126
178  TIM+F+R6      9653.112     241 19788.223    19849.134    21156.253
183  TIM2e         10465.867    228 21387.734    21441.896    22681.970
184  TIM2e+I       9879.975     229 20217.950    20272.615    21517.862
185  TIM2e+G4      9782.660     229 20023.319    20077.985    21323.232
186  TIM2e+I+G4    9712.038     230 19884.075    19939.246    21189.664
187  TIM2e+R2      9717.542     230 19895.083    19950.255    21200.672
188  TIM2e+R3      9679.166     232 19822.333    19878.524    21139.275
189  TIM2e+R4      9664.095     234 19796.190    19853.412    21124.485
190  TIM2e+R5      9651.272     236 19774.543    19832.806    21114.191
191  TIM2e+R6      9647.251     238 19770.502    19829.816    21121.503
196  TIM2+F        10452.053    231 21366.107    21421.787    22677.372
197  TIM2+F+I      9857.365     232 20178.730    20234.922    21495.672
198  TIM2+F+G4     9757.153     232 19978.307    20034.498    21295.249
199  TIM2+F+I+G4   9690.451     233 19846.901    19903.606    21169.520
200  TIM2+F+R2     9705.846     233 19877.692    19934.397    21200.310
201  TIM2+F+R3     9666.843     235 19803.685    19861.426    21137.657
202  TIM2+F+R4     9651.755     237 19777.510    19836.297    21122.835
203  TIM2+F+R5     9638.745     239 19755.489    19815.333    21112.167
204  TIM2+F+R6     9634.506     241 19751.013    19811.923    21119.043
209  TIM3e         10453.726    228 21363.453    21417.615    22657.689
210  TIM3e+I       9863.635     229 20185.269    20239.935    21485.182
211  TIM3e+G4      9775.936     229 20009.871    20064.537    21309.784
212  TIM3e+I+G4    9702.461     230 19864.922    19920.093    21170.511
213  TIM3e+R2      9709.042     230 19878.084    19933.256    21183.673
214  TIM3e+R3      9670.197     232 19804.394    19860.586    21121.336
215  TIM3e+R4      9654.993     234 19777.985    19835.207    21106.280
216  TIM3e+R5      9641.919     236 19755.839    19814.101    21095.487
217  TIM3e+R6      9637.780     238 19751.559    19810.873    21102.560
222  TIM3+F        10435.646    231 21333.292    21388.972    22644.557
223  TIM3+F+I      9844.494     232 20152.987    20209.179    21469.929
224  TIM3+F+G4     9748.342     232 19960.684    20016.875    21277.625
225  TIM3+F+I+G4   9679.505     233 19825.010    19881.715    21147.628
226  TIM3+F+R2     9695.930     233 19857.861    19914.566    21180.479
227  TIM3+F+R3     9655.848     235 19781.697    19839.437    21115.668
228  TIM3+F+R4     9640.798     237 19755.596    19814.383    21100.920
229  TIM3+F+R5     9627.793     239 19733.586    19793.430    21090.263
230  TIM3+F+R6     9623.466     241 19728.931    19789.842    21096.962
235  TVMe          10536.792    229 21531.583    21586.249    22831.496
236  TVMe+I        9893.602     230 20247.203    20302.374    21552.792
237  TVMe+G4       9827.196     230 20114.392    20169.563    21419.981
238  TVMe+I+G4     9746.768     231 19955.536    20011.216    21266.801
239  TVMe+R2       9765.639     231 19993.278    20048.958    21304.543
240  TVMe+R3       9726.230     233 19918.460    19975.165    21241.079
241  TVMe+R4       9709.675     235 19889.349    19947.090    21223.320
242  TVMe+R5       9694.327     237 19862.653    19921.440    21207.978
243  TVMe+R6       9688.619     239 19855.238    19915.081    21211.915
248  TVM+F         10533.864    232 21531.729    21587.920    22848.671
249  TVM+F+I       9872.536     233 20211.072    20267.777    21533.690
250  TVM+F+G4      9802.119     233 20070.238    20126.944    21392.857
251  TVM+F+I+G4    9728.273     234 19924.546    19981.768    21252.841
252  TVM+F+R2      9761.390     234 19990.780    20048.002    21319.075
253  TVM+F+R3      9721.308     236 19914.615    19972.878    21254.263
254  TVM+F+R4      9704.096     238 19884.192    19943.506    21235.193
255  TVM+F+R5      9687.331     240 19854.661    19915.037    21217.015
256  TVM+F+R6      9680.761     242 19845.521    19906.970    21219.228
261  SYM           10447.397    230 21354.793    21409.965    22660.382
262  SYM+I         9854.028     231 20170.056    20225.736    21481.322
263  SYM+G4        9765.734     231 19993.469    20049.149    21304.734
264  SYM+I+G4      9695.158     232 19854.316    19910.507    21171.258
265  SYM+R2        9703.666     232 19871.331    19927.523    21188.273
266  SYM+R3        9665.511     234 19799.021    19856.243    21127.316
267  SYM+R4        9650.759     236 19773.518    19831.780    21113.166
268  SYM+R5        9637.721     238 19751.441    19810.755    21102.442
269  SYM+R6        9633.571     240 19747.143    19807.518    21109.496
274  GTR+F         10417.920    233 21301.840    21358.546    22624.459
275  GTR+F+I       9816.079     234 20100.158    20157.380    21428.453
276  GTR+F+G4      9718.985     234 19905.970    19963.192    21234.265
277  GTR+F+I+G4    9653.922     235 19777.844    19835.584    21111.815
278  GTR+F+R2      9675.540     235 19821.081    19878.821    21155.052
279  GTR+F+R3      9636.304     237 19746.608    19805.395    21091.932
280  GTR+F+R4      9621.981     239 19721.963    19781.806    21078.640
281  GTR+F+R5      9608.445     241 19698.891    19759.801    21066.921
282  GTR+F+R6      9603.962     243 19693.923    19755.912    21073.306
Akaike Information Criterion:           GTR+F+R6
Corrected Akaike Information Criterion: GTR+F+R6
Bayesian Information Criterion:         GTR+F+R5
Best-fit model: GTR+F+R5 chosen according to BIC

All model information printed to Pettalidae_28S_mafft.fasta.model.gz
CPU time for ModelFinder: 78.916 seconds (0h:1m:18s)
Wall-clock time for ModelFinder: 79.480 seconds (0h:1m:19s)
Generating 1000 samples for ultrafast bootstrap (seed: 26988)...

NOTE: 13 MB RAM (0 GB) is required!
Estimate model parameters (epsilon = 0.100)
1. Initial log-likelihood: -10356.451
2. Current log-likelihood: -9684.065
3. Current log-likelihood: -9656.289
4. Current log-likelihood: -9650.347
5. Current log-likelihood: -9643.822
6. Current log-likelihood: -9636.109
7. Current log-likelihood: -9629.494
8. Current log-likelihood: -9624.840
9. Current log-likelihood: -9621.545
10. Current log-likelihood: -9619.024
11. Current log-likelihood: -9617.051
12. Current log-likelihood: -9615.347
13. Current log-likelihood: -9613.947
14. Current log-likelihood: -9612.864
15. Current log-likelihood: -9612.134
16. Current log-likelihood: -9611.567
17. Current log-likelihood: -9611.121
18. Current log-likelihood: -9610.762
19. Current log-likelihood: -9610.464
20. Current log-likelihood: -9610.214
21. Current log-likelihood: -9609.999
22. Current log-likelihood: -9609.813
23. Current log-likelihood: -9609.650
24. Current log-likelihood: -9609.507
25. Current log-likelihood: -9609.380
26. Current log-likelihood: -9609.267
27. Current log-likelihood: -9609.166
Optimal log-likelihood: -9609.073
Rate parameters:  A-C: 0.77797  A-G: 1.24157  A-T: 1.89880  C-G: 0.38184  C-T: 4.80180  G-T: 1.00000
Base frequencies:  A: 0.210  C: 0.267  G: 0.333  T: 0.190
Site proportion and rates:  (0.810,0.169) (0.024,0.567) (0.037,2.945) (0.090,3.065) (0.039,11.957)
Parameters optimization took 27 rounds (8.276 sec)
Computing ML distances based on estimated model parameters... 0.124 sec
Computing BIONJ tree...
0.050 seconds
Log-likelihood of BIONJ tree: -9678.119
--------------------------------------------------------------------
|             INITIALIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Generating 98 parsimony trees... 1.111 second
Computing log-likelihood of 98 initial trees ... 3.687 seconds
Current best score: -9603.800

Do NNI search on 20 best initial trees
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 1: -9590.412
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 4: -9589.368
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 5: -9587.988
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 6: -9585.441
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 7: -9583.882
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 8: -9582.107
Iteration 10 / LogL: -9591.274 / Time: 0h:0m:22s
Iteration 20 / LogL: -9599.043 / Time: 0h:0m:27s
Finish initializing candidate tree set (20)
Current best tree score: -9582.107 / CPU time: 18.602
Number of iterations: 20
--------------------------------------------------------------------
|               OPTIMIZING CANDIDATE TREE SET                      |
--------------------------------------------------------------------
Iteration 30 / LogL: -9603.283 / Time: 0h:0m:33s (0h:1m:29s left)
Iteration 40 / LogL: -9591.847 / Time: 0h:0m:39s (0h:1m:8s left)
Iteration 50 / LogL: -9582.820 / Time: 0h:0m:45s (0h:0m:54s left)
Log-likelihood cutoff on original alignment: -9618.531
Iteration 60 / LogL: -9587.591 / Time: 0h:0m:51s (0h:0m:42s left)
BETTER TREE FOUND at iteration 69: -9582.101
Iteration 70 / LogL: -9582.972 / Time: 0h:0m:58s (0h:1m:23s left)
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 71: -9581.975
BETTER TREE FOUND at iteration 75: -9581.973
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 77: -9581.751
Iteration 80 / LogL: -9584.967 / Time: 0h:1m:4s (0h:1m:19s left)
BETTER TREE FOUND at iteration 89: -9581.746
Iteration 90 / LogL: -9595.100 / Time: 0h:1m:11s (0h:1m:19s left)
Iteration 100 / LogL: -9583.285 / Time: 0h:1m:17s (0h:1m:9s left)
Log-likelihood cutoff on original alignment: -9618.531
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.992
BETTER TREE FOUND at iteration 106: -9581.744
BETTER TREE FOUND at iteration 108: -9581.744
Iteration 110 / LogL: -9581.746 / Time: 0h:1m:23s (0h:1m:15s left)
BETTER TREE FOUND at iteration 116: -9581.740
BETTER TREE FOUND at iteration 120: -9581.740
Iteration 120 / LogL: -9581.740 / Time: 0h:1m:30s (0h:1m:16s left)
Iteration 130 / LogL: -9585.108 / Time: 0h:1m:38s (0h:1m:8s left)
Estimate model parameters (epsilon = 0.100)
BETTER TREE FOUND at iteration 137: -9581.558
Iteration 140 / LogL: -9585.237 / Time: 0h:1m:45s (0h:1m:13s left)
Iteration 150 / LogL: -9585.252 / Time: 0h:1m:51s (0h:1m:5s left)
Log-likelihood cutoff on original alignment: -9618.531
Iteration 160 / LogL: -9583.765 / Time: 0h:1m:58s (0h:0m:57s left)
Iteration 170 / LogL: -9587.229 / Time: 0h:2m:4s (0h:0m:49s left)
Iteration 180 / LogL: -9581.721 / Time: 0h:2m:11s (0h:0m:41s left)
Iteration 190 / LogL: -9591.429 / Time: 0h:2m:17s (0h:0m:34s left)
Iteration 200 / LogL: -9582.117 / Time: 0h:2m:23s (0h:0m:26s left)
Log-likelihood cutoff on original alignment: -9618.531
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.993
UPDATE BEST LOG-LIKELIHOOD: -9581.557
BETTER TREE FOUND at iteration 210: -9581.556
Iteration 210 / LogL: -9581.556 / Time: 0h:2m:30s (0h:1m:11s left)
Iteration 220 / LogL: -9601.048 / Time: 0h:2m:37s (0h:1m:4s left)
Iteration 230 / LogL: -9583.607 / Time: 0h:2m:43s (0h:0m:57s left)
BETTER TREE FOUND at iteration 231: -9581.555
UPDATE BEST LOG-LIKELIHOOD: -9581.554
Iteration 240 / LogL: -9587.889 / Time: 0h:2m:49s (0h:1m:4s left)
Iteration 250 / LogL: -9585.956 / Time: 0h:2m:55s (0h:0m:57s left)
Log-likelihood cutoff on original alignment: -9618.531
Iteration 260 / LogL: -9582.286 / Time: 0h:3m:2s (0h:0m:50s left)
BETTER TREE FOUND at iteration 268: -9581.551
Iteration 270 / LogL: -9585.487 / Time: 0h:3m:9s (0h:1m:8s left)
Iteration 280 / LogL: -9581.556 / Time: 0h:3m:15s (0h:1m:1s left)
BETTER TREE FOUND at iteration 286: -9581.549
Iteration 290 / LogL: -9590.302 / Time: 0h:3m:22s (0h:1m:7s left)
Iteration 300 / LogL: -9589.395 / Time: 0h:3m:28s (0h:0m:59s left)
Log-likelihood cutoff on original alignment: -9618.531
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.997
BETTER TREE FOUND at iteration 308: -9581.548
Iteration 310 / LogL: -9581.549 / Time: 0h:3m:35s (0h:1m:8s left)
Iteration 320 / LogL: -9582.605 / Time: 0h:3m:42s (0h:1m:1s left)
Iteration 330 / LogL: -9581.553 / Time: 0h:3m:48s (0h:0m:54s left)
Iteration 340 / LogL: -9585.487 / Time: 0h:3m:54s (0h:0m:47s left)
Iteration 350 / LogL: -9581.551 / Time: 0h:4m:1s (0h:0m:40s left)
Log-likelihood cutoff on original alignment: -9618.531
Iteration 360 / LogL: -9581.709 / Time: 0h:4m:7s (0h:0m:33s left)
Iteration 370 / LogL: -9585.682 / Time: 0h:4m:14s (0h:0m:26s left)
UPDATE BEST LOG-LIKELIHOOD: -9581.548
Iteration 380 / LogL: -9595.086 / Time: 0h:4m:21s (0h:0m:19s left)
Iteration 390 / LogL: -9582.282 / Time: 0h:4m:27s (0h:0m:12s left)
Iteration 400 / LogL: -9594.193 / Time: 0h:4m:33s (0h:0m:5s left)
Log-likelihood cutoff on original alignment: -9618.531
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.997
BETTER TREE FOUND at iteration 407: -9581.547
Iteration 410 / LogL: -9581.947 / Time: 0h:4m:40s (0h:1m:6s left)
Iteration 420 / LogL: -9582.274 / Time: 0h:4m:47s (0h:0m:59s left)
Iteration 430 / LogL: -9589.208 / Time: 0h:4m:53s (0h:0m:52s left)
UPDATE BEST LOG-LIKELIHOOD: -9581.547
Iteration 440 / LogL: -9599.306 / Time: 0h:4m:59s (0h:0m:45s left)
Iteration 450 / LogL: -9581.550 / Time: 0h:5m:6s (0h:0m:38s left)
Log-likelihood cutoff on original alignment: -9618.729
Iteration 460 / LogL: -9581.549 / Time: 0h:5m:12s (0h:0m:32s left)
BETTER TREE FOUND at iteration 462: -9581.545
Iteration 470 / LogL: -9582.606 / Time: 0h:5m:19s (0h:1m:2s left)
Iteration 480 / LogL: -9608.315 / Time: 0h:5m:25s (0h:0m:55s left)
UPDATE BEST LOG-LIKELIHOOD: -9581.543
Iteration 490 / LogL: -9607.555 / Time: 0h:5m:32s (0h:0m:48s left)
Iteration 500 / LogL: -9582.275 / Time: 0h:5m:38s (0h:0m:42s left)
Log-likelihood cutoff on original alignment: -9618.729
NOTE: Bootstrap correlation coefficient of split occurrence frequencies: 0.999
Iteration 510 / LogL: -9581.696 / Time: 0h:5m:44s (0h:1m:0s left)
Iteration 520 / LogL: -9599.680 / Time: 0h:5m:51s (0h:0m:54s left)
Iteration 530 / LogL: -9583.038 / Time: 0h:5m:57s (0h:0m:47s left)
Iteration 540 / LogL: -9585.081 / Time: 0h:6m:3s (0h:0m:40s left)
Iteration 550 / LogL: -9603.541 / Time: 0h:6m:9s (0h:0m:33s left)
Log-likelihood cutoff on original alignment: -9618.729
Iteration 560 / LogL: -9587.665 / Time: 0h:6m:15s (0h:0m:26s left)
TREE SEARCH COMPLETED AFTER 563 ITERATIONS / Time: 0h:6m:17s

--------------------------------------------------------------------
|                    FINALIZING TREE SEARCH                        |
--------------------------------------------------------------------
Performs final model parameters optimization
Estimate model parameters (epsilon = 0.010)
1. Initial log-likelihood: -9581.543
2. Current log-likelihood: -9581.516
3. Current log-likelihood: -9581.502
Optimal log-likelihood: -9581.492
Rate parameters:  A-C: 0.77403  A-G: 1.27401  A-T: 1.90642  C-G: 0.39367  C-T: 4.91537  G-T: 1.00000
Base frequencies:  A: 0.210  C: 0.267  G: 0.333  T: 0.190
Site proportion and rates:  (0.832,0.183) (0.005,0.613) (0.038,3.236) (0.093,3.255) (0.032,12.912)
Parameters optimization took 3 rounds (0.583 sec)
BEST SCORE FOUND : -9581.492

Testing tree branches by SH-like aLRT with 1000 replicates...
5.754 sec.
Creating bootstrap support values...
Split supports printed to NEXUS file Pettalidae_28S_mafft.fasta.splits.nex
Total tree length: 0.939

Total number of iterations: 563
CPU time used for tree search: 366.796 sec (0h:6m:6s)
Wall-clock time used for tree search: 369.218 sec (0h:6m:9s)
Total CPU time used: 381.972 sec (0h:6m:21s)
Total wall-clock time used: 384.667 sec (0h:6m:24s)

Computing bootstrap consensus tree...
Reading input file Pettalidae_28S_mafft.fasta.splits.nex...
114 taxa and 1086 splits.
Consensus tree written to Pettalidae_28S_mafft.fasta.contree
Reading input trees file Pettalidae_28S_mafft.fasta.contree
Log-likelihood of consensus tree: -9582.016

Analysis results written to: 
  IQ-TREE report:                Pettalidae_28S_mafft.fasta.iqtree
  Maximum-likelihood tree:       Pettalidae_28S_mafft.fasta.treefile
  Likelihood distances:          Pettalidae_28S_mafft.fasta.mldist

Ultrafast bootstrap approximation results written to:
  Split support values:          Pettalidae_28S_mafft.fasta.splits.nex
  Consensus tree:                Pettalidae_28S_mafft.fasta.contree
  Screen log file:               Pettalidae_28S_mafft.fasta.log

Date and Time: Wed Jun 15 23:02:20 2022
